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docs(README): clarify manual memory vs agent memory systems
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@ -69,6 +69,11 @@ Each project repo can extend the team with local config in `.claude/`:
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Commit `.claude/` with the project so the team has context wherever it runs.
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## Agent memory
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## Memory
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Agents with `memory: project` scope write persistent memory to `.claude/agent-memory/` in the project directory. This memory is project-scoped and can be committed with the repo so future sessions pick up where prior ones left off.
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Two memory systems coexist:
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- **Manual memory** (`.claude/memory/`) — curated context files with YAML frontmatter, indexed by `MEMORY.md`. Loaded as part of the CLAUDE.md hierarchy on every session. Use this for project decisions, user preferences, and reference pointers.
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- **Agent memory** (`.claude/agent-memory/`) — Claude Code's built-in runtime memory, written automatically by agents with `memory: project` scope. Excluded from CLAUDE.md context via `claudeMdExcludes` to avoid polluting the context window.
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Commit both directories with the repo so memory persists across machines and sessions.
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